Miyakogusa Predicted Gene

Lj0g3v0351959.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JXF4_SOYBN 2161 69.0 77.2 (tr|I1JXF4) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G48430.1 1051 54.9 65.8 | Symbols: REF6 | relative of early flowering 6 | chr3:17935609-17940456 FORWARD LENGTH=1360
Medicago Medtr3g075210.1 2026 66.5 74.2 | lysine-specific demethylase REF6-like protein, putative | HC | chr3:34224724-34214998 | 20130731
Soybean Glyma04g36630.1 1990 66.0 74.0  
LJGI gnl|LJGI|GO010329 1326 99.7 99.7 similar to UniRef100_A7PCK1 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0351959.1 length: 1558 aa.
IPR003347 JmjC domain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF02373 JmjC 7.3e-37 215-334
HMMSmart SM00558 A 1.3e-49 182-351
ProfileScan PS51184 JMJC 33.220 182-351
IPR003349 Transcription factor jumonji, JmjN
HMMPfam PF02375 JmjN 2.7e-13 23-56
HMMSmart SM00545 Small 2.6e-14 21-62
ProfileScan PS51183 JMJN 14.368 22-63
IPR007087 Zinc finger, C2H2
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 1467-1489
1497-1519
1527-1551
ProfileScan PS50157 ZINC_FINGER_C2H2_2 11.572 1465-1494
1495-1524
1525-1556
IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function GO:0003676 nucleic acid binding    
Gene3D G3DSA:3.30.160.60 no description 2.5e-08 1493-1519
1520-1548
IPR015880 Zinc finger, C2H2-like
HMMSmart SM00355 zinc 1.2 1442-1464
1465-1489
1495-1519
1525-1551
no_ID  
HMMPanther PTHR10694 JUMONJI 9.3e-119 15-417
HMMPfam PF13894 zf-C2H2_4 0.27 1466-1489
Seg seg seg NA 121-139
1250-1265
1385-1391
superfamily SSF51197 Clavaminate 4.4e-26 198-370
superfamily SSF57667 C2H2 0.00088 1477-1523
1513-1551
1438-1489
Wolf-PSORT
Lj0g3v0351959.1	nucl 7.5, cysk_nucl 4.5, extr 2, chlo 1, cyto 1, mito 1, plas 1, chlo_mito 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0351959.1