Miyakogusa Predicted Gene

Lj0g3v0351219.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LEI6_SOYBN 619 59.0 77.1 (tr|K7LEI6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G12700.1 365 37.6 59.8 | Symbols: | ATP binding;nucleic acid binding;helicases | chr1:4323722-4326227 REVERSE LENGTH=735
Medicago Medtr6g065540.1 614 59.6 74.7 | pentatricopeptide (PPR) repeat protein | HC | chr6:24265034-24262613 | 20130731
Soybean Glyma09g30530.1 612 58.7 77.5  
LJGI gnl|LJGI|AV766731 789 92.9 92.9 weakly similar to UniRef100_A7P2U1 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0351219.1 length: 534 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.24 505-532
HMMPfam PF12854 PPR_1 2.8e-12 148-179
183-212
286-305
322-353
HMMPfam PF13041 PPR_2 9.7e-13 83-130
219-269
360-409
430-479
HMMTigr TIGR00756 PPR: 8.7e-09 88-117
120-153
188-220
222-257
259-291
293-327
329-362
363-396
399-431
433-466
469-502
ProfileScan PS51375 PPR 7.969 83-117
48-82
118-152
153-183
185-219
220-254
256-290
291-325
326-360
361-395
396-430
431-465
466-500
501-534
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00025 246-279
no_ID  
HMMPanther PTHR24015 FAMILY 4e-153 1-529
HMMPanther PTHR24015:SF0 SUBFAMILY 4e-153 1-529
Seg seg seg NA 2-27
43-55
Wolf-PSORT
Lj0g3v0351219.1	mito 8.5, chlo_mito 7.83333, cyto_mito 5.16667, chlo 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0351219.1