Miyakogusa Predicted Gene

Lj0g3v0350309.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L767_MEDTR 763 76.6 87.4 (tr|G7L767) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_8g072150 PE=4 SV=1
TAIR_pep AT1G77360.1 194 27.2 50.0 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29071983-29073536 REVERSE LENGTH=517
Medicago Medtr8g072150.1 762 76.6 87.4 | PPR containing plant-like protein | HC | chr8:30459094-30456922 | 20130731
Soybean Glyma16g17010.1 635 76.8 89.2  
LJGI gnl|LJGI|TC82086 1249 99.8 99.8 weakly similar to UniRef100_A7QKN3 Cluster: Chromosome chr2 scaffold_113, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_113, whole genome shotgun sequence - Vitis vinifera (Grape), partial (44%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0350309.1 length: 491 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.13 108-137
142-171
HMMPfam PF13041 PPR_2 2.7e-12 315-363
HMMPfam PF13812 PPR_3 0.074 392-420
HMMTigr TIGR00756 PPR: 7.1e-07 318-351
354-386
ProfileScan PS51375 PPR 5.459 139-173
105-135
174-205
209-239
246-280
316-350
281-315
351-385
386-420
421-455
no_ID  
HMMPanther PTHR24015 FAMILY 1.8e-69 1-461
HMMPanther PTHR24015:SF0 SUBFAMILY 1.8e-69 1-461
Seg seg seg NA 6-26
Wolf-PSORT
Lj0g3v0350309.1	chlo 4, nucl 4, mito 3, cyto 1, cysk 1, golg 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0350309.1