Miyakogusa Predicted Gene
- Lj0g3v0349799.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1L482_SOYBN |
219 |
76.5 |
86.8 |
(tr|I1L482) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G52450.1 |
186 |
69.2 |
80.5 |
| Symbols: | MATE efflux family protein | chr5:21289042-21291749 REVERSE LENGTH=486 |
| Medicago |
Medtr6g081810.1 |
213 |
75.0 |
87.5 |
| MATE efflux family protein | HC | chr6:30514588-30509991 | 20130731 |
| Soybean |
Glyma09g31030.1 |
219 |
76.5 |
86.8 |
|
| LJGI |
gnl|LJGI|TC69358 |
262 |
83.2 |
83.2 |
similar to UniRef100_A7PH11 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0349799.1 |
length: 138 aa. |
| IPR002528 |
Multi antimicrobial extrusion protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006855 |
drug transmembrane transport |
|
|
| Molecular Function |
GO:0015238 |
drug transmembrane transporter activity |
|
|
| Molecular Function |
GO:0015297 |
antiporter activity |
|
|
| Cellular Component |
GO:0016020 |
membrane |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF01554 |
MatE |
4.9e-27 |
23-137 |
| no_ID |
|
| HMMPanther |
PTHR11206 |
MULTIDRUG |
3.1e-67 |
1-137 |
| HMMPanther |
PTHR11206:SF21 |
MATE |
3.1e-67 |
1-137 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
21 |
43 |
| 52 |
74 |
| 98 |
120 |
- Wolf-PSORT
Lj0g3v0349799.1 vacu 6, chlo 2, plas 2, extr 2, mito 1, E.R. 1, nucl_plas 1, golg_plas 1, cysk_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0349799.1 |
|