Miyakogusa Predicted Gene

Lj0g3v0344349.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SK86_LOTJA 125 100.0 100.0 (tr|I3SK86) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G73530.1 87.8 80.0 92.0 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:27643801-27645386 REVERSE LENGTH=181
Medicago Medtr6g477870.1 108 91.1 96.4 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr6:28646362-28643393 | 20130731
Soybean Glyma16g34330.1 109 87.9 94.8  
LJGI gnl|LJGI|TC58861 369 100.0 100.0 similar to UniRef100_A7QJZ9 Cluster: Chromosome undetermined scaffold_109, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_109, whole genome shotgun sequence - Vitis vinifera (Grape), partial (52%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0344349.1 length: 61 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 1.3e-08 5-39
ProfileScan PS50102 RRM 10.957 1-46
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 1.7e-12 2-51
no_ID  
HMMPanther PTHR24012 FAMILY 1.2e-13 2-52
HMMPanther PTHR24012:SF62 SUBFAMILY 1.2e-13 2-52
superfamily SSF54928 RNA-binding 9e-13 1-55
Wolf-PSORT
Lj0g3v0344349.1	nucl 6, mito 4, chlo 3, cysk_nucl 3, nucl_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0344349.1