Miyakogusa Predicted Gene
- Lj0g3v0344269.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T6B4_LOTJA |
156 |
100.0 |
100.0 |
(tr|I3T6B4) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1 |
| TAIR_pep |
AT3G54085.2 |
95.1 |
56.4 |
75.6 |
| Symbols: | Yos1-like protein | chr3:20026780-20027016 REVERSE LENGTH=78 |
| Medicago |
Medtr4g019160.1 |
94.7 |
59.7 |
76.6 |
| Yos1-like protein | HC | chr4:5956061-5952088 | 20130731 |
| Soybean |
Glyma03g14970.1 |
102 |
61.0 |
79.2 |
|
| LJGI |
gnl|LJGI|TC65734 |
468 |
100.0 |
100.0 |
similar to UniRef100_A7Q5G7 Cluster: Chromosome undetermined scaffold_53, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_53, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0344269.1 |
length: 77 aa. |
| IPR013880 |
Yos1-like |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR15858 |
UNCHARACTERIZED |
1.5e-28 |
1-77 |
| HMMPfam |
PF08571 |
Yos1 |
3e-21 |
3-77 |
| no_ID |
|
| HMMPanther |
PTHR15858:SF0 |
SUBFAMILY |
1.5e-28 |
1-77 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
1 |
23 |
| 55 |
76 |
- Wolf-PSORT
Lj0g3v0344269.1 cyto 4.5, cyto_E.R. 3.5, extr 2, E.R. 1.5, nucl 1, mito 1, plas 1, vacu 1, cysk 1, golg 1, cysk_nucl 1, nucl_plas 1, golg_plas 1, cysk_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0344269.1 |
|