Miyakogusa Predicted Gene

Lj0g3v0343009.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JGU0_MEDTR 806 81.6 88.7 (tr|G7JGU0) Uncharacterized protein OS=Medicago truncatula GN=MTR_4g131270 PE=2 SV=1
TAIR_pep AT1G20370.1 555 59.6 74.1 | Symbols: | Pseudouridine synthase family protein | chr1:7051846-7053588 REVERSE LENGTH=549
Medicago Medtr4g131270.1 806 81.6 88.7 | tRNA pseudouridine synthase A, related protein | HC | chr4:54768312-54766231 | 20130731
Soybean Glyma02g36350.1 787 81.1 88.6  
LJGI gnl|LJGI|FS319357 971 99.8 99.8 similar to UniRef100_A7NVQ8 Cluster: Pseudouridylate synthase; n=1; Vitis vinifera|Rep: Pseudouridylate synthase - Vitis vinifera (Grape), partial (37%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0343009.1 length: 507 aa.
IPR001406 Pseudouridine synthase I, TruA
method AccNumber shortName E-value location
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HMMPanther PTHR11142 PSEUDOURIDYLATE 5.7e-104 32-490
IPR020094 Pseudouridine synthase I, TruA, N-terminal
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
Gene3D G3DSA:3.30.70.580 no description 4e-23 35-146
IPR020095 Pseudouridine synthase I, TruA, C-terminal
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
Gene3D G3DSA:3.30.70.660 no description 1.1e-28 306-428
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HMMPfam PF01416 PseudoU_synth_1 9.6e-11 40-140
321-426
IPR020103 Pseudouridine synthase, catalytic domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
superfamily SSF55120 Pseudouridine 9.3e-60 33-444
no_ID  
Seg seg seg NA 2-27
Wolf-PSORT
Lj0g3v0343009.1	nucl 7, cyto 4, cysk 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0343009.1