Miyakogusa Predicted Gene

Lj0g3v0342589.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MY19_SOYBN 1434 75.0 80.1 (tr|I1MY19) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G19850.1 939 57.3 67.0 | Symbols: MP, ARF5, IAA24 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr1:6887353-6891182 FORWARD LENGTH=902
Medicago Medtr1g024025.1 1290 69.0 75.1 | auxin response factor 2 | LC | chr1:7778460-7771119 | 20130731
Soybean Glyma14g40540.1 1425 74.9 79.8  
LJGI gnl|LJGI|TC81270 660 100.0 100.0 similar to UniRef100_A7NSY4 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0342589.2 length: 958 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 1.7e-25 840-941
IPR003340 B3 DNA binding domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 6.4e-22 184-285
HMMSmart SM01019 B3 4.1e-23 184-286
ProfileScan PS50863 B3 12.788 184-286
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 6e-34 310-393
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 26.078 853-935
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 2.6e-39 176-298
superfamily SSF101936 DNA-binding 6.9e-51 167-314
no_ID  
HMMPanther PTHR31384 FAMILY 2.4e-225 53-954
Seg seg seg NA 11-24
308-315
526-533
606-616
751-772
superfamily SSF54277 CAD 3.2e-09 840-933
Putative transmembrane regions
  From To
TM segments
SOSUI		 30 52
54 74
Wolf-PSORT
Lj0g3v0342589.2	extr 4, nucl 2, plas 2, vacu 2, nucl_plas 2, chlo 1, cyto 1, mito 1, E.R. 1, chlo_mito 1, cysk_nucl 1, golg_plas 1, cysk_plas 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0342589.2