Miyakogusa Predicted Gene

Lj0g3v0342589.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MY19_SOYBN 1445 76.9 82.0 (tr|I1MY19) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G19850.1 950 56.2 65.9 | Symbols: MP, ARF5, IAA24 | Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related | chr1:6887353-6891182 FORWARD LENGTH=902
Medicago Medtr1g024025.1 1304 71.1 77.2 | auxin response factor 2 | LC | chr1:7778460-7771119 | 20130731
Soybean Glyma14g40540.1 1437 76.8 81.7  
LJGI gnl|LJGI|TC81270 660 100.0 100.0 similar to UniRef100_A7NSY4 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0342589.1 length: 927 aa.
IPR003311 AUX/IAA protein
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02309 AUX_IAA 1.6e-25 809-910
IPR003340 B3 DNA binding domain
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 6.1e-22 153-254
HMMSmart SM01019 B3 4.1e-23 153-255
ProfileScan PS50863 B3 12.788 153-255
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 5.7e-34 279-362
IPR011525 Aux/IAA-ARF-dimerisation
Molecular Function GO:0046983 protein dimerization activity    
ProfileScan PS50962 IAA_ARF 26.078 822-904
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 2.5e-39 145-267
superfamily SSF101936 DNA-binding 6.9e-51 136-283
no_ID  
HMMPanther PTHR31384 FAMILY 2.3e-224 42-923
Seg seg seg NA 11-24
277-284
495-502
575-585
720-741
superfamily SSF54277 CAD 3.2e-09 809-902
Wolf-PSORT
Lj0g3v0342589.1	nucl 9, chlo 2, extr 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0342589.1