Miyakogusa Predicted Gene

Lj0g3v0342229.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7L3S3_SOYBN 1117 63.5 70.1 (tr|K7L3S3) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT2G28290.1 322 63.5 76.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr2:12056771-12072950 FORWARD LENGTH=3574

Medicago Medtr4g118720.1 1007 57.5 67.2 | SNF2 family amine-terminal protein | HC | chr4:49190490-49169826 | 20130731

Soybean Glyma17g02540.1 938 59.3 66.4

LJGI gnl|LJGI|BP085060 141 88.5 88.5 weakly similar to UniRef100_A7NW95 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0342229.1 length: 882 aa.

IPR014012 Helicase/SANT-associated, DNA binding

method AccNumber shortName E-value location

ProfileScan PS51204 HSA 11.881 721-793

IPR014978 Glutamine-Leucine-Glutamine, QLQ

Molecular Function GO:0005524 ATP binding

Cellular Component GO:0005634 nucleus

Biological Process GO:0006355 regulation of transcription, DNA-dependent

Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides

HMMSmart SM00951 no description 0.0025 347-382

no_ID

Coil coil coiled-coil NA 714-735
815-836

Seg seg seg NA 398-411
668-681
724-735
852-864

Wolf-PSORT

Lj0g3v0342229.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0342229.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7L3S3_SOYBN	1117	63.5	70.1	(tr\|K7L3S3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT2G28290.1	322	63.5	76.2	\| Symbols: SYD, CHR3 \| P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr2:12056771-12072950 FORWARD LENGTH=3574
Medicago	Medtr4g118720.1	1007	57.5	67.2	\| SNF2 family amine-terminal protein \| HC \| chr4:49190490-49169826 \| 20130731
Soybean	Glyma17g02540.1	938	59.3	66.4
LJGI	gnl\|LJGI\|BP085060	141	88.5	88.5	weakly similar to UniRef100_A7NW95 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (4%)

IPR014012	Helicase/SANT-associated, DNA binding
Lj0g3v0342229.1				length: 882 aa.
method	AccNumber	shortName	E-value	location
ProfileScan	PS51204	HSA	11.881	721-793
IPR014978	Glutamine-Leucine-Glutamine, QLQ
Molecular Function	GO:0005524	ATP binding
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
Molecular Function	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
HMMSmart	SM00951	no description	0.0025	347-382
no_ID
Coil	coil	coiled-coil	NA	714-735 815-836
Seg	seg	seg	NA	398-411 668-681 724-735 852-864