Miyakogusa Predicted Gene

Lj0g3v0339859.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L9E7_SOYBN 916 71.8 81.1 (tr|I1L9E7) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G11460.1 733 59.0 74.4 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:3608250-3610121 FORWARD LENGTH=623
Medicago Medtr1g059810.1 912 70.7 81.2 | pentatricopeptide (PPR) repeat protein | HC | chr1:26032045-26029503 | 20130731
Soybean Glyma10g08580.1 832 71.5 80.2  
LJGI gnl|LJGI|TC60225 1505 99.9 99.9 weakly similar to UniRef100_A7PPC3 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0339859.1 length: 638 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00018 30-58
129-157
207-233
409-435
HMMPfam PF13041 PPR_2 1.5e-09 234-281
334-382
HMMPfam PF13812 PPR_3 0.081 309-334
HMMTigr TIGR00756 PPR: 0.00034 38-63
129-158
208-234
236-269
309-336
337-370
374-405
410-434
ProfileScan PS51375 PPR 5.733 27-61
62-96
127-161
97-123
234-268
203-233
335-369
304-334
269-303
370-400
406-436
438-468
472-506
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.4e-08 406-491
no_ID  
HMMPanther PTHR24015 FAMILY 9.7e-282 31-638
HMMPanther PTHR24015:SF58 OS10G0501200 9.7e-282 31-638
HMMPfam PF14432 DYW_deaminase 1.2e-11 518-628
Seg seg seg NA 59-70
342-354
Wolf-PSORT
Lj0g3v0339859.1	chlo 9, pero 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0339859.1