Miyakogusa Predicted Gene
- Lj0g3v0338939.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JXD0_SOYBN |
618 |
91.6 |
95.6 |
(tr|I1JXD0) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G67960.1 |
494 |
73.8 |
84.7 |
| Symbols: | CONTAINS InterPro DOMAIN/s: Membrane protein,Tapt1/CMV receptor (InterPro:IPR008010); Has 447 Blast hits to 428 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 190; Fungi - 133; Plants - 49; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | chr1:25480808-25484176 REVERSE LENGTH=624 |
| Medicago |
Medtr3g076570.1 |
585 |
88.2 |
91.9 |
| pollen defective IN guidance-like protein | HC | chr3:34425286-34418207 | 20130731 |
| Soybean |
Glyma04g36330.1 |
618 |
91.6 |
95.6 |
|
| LJGI |
gnl|LJGI|TC63144 |
827 |
99.3 |
99.3 |
similar to UniRef100_A7P3Y3 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0338939.1 |
length: 322 aa. |
| IPR008010 |
Membrane protein,Tapt1/CMV receptor |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR13317 |
UNCHARACTERIZED |
7.1e-115 |
2-315 |
| HMMPfam |
PF05346 |
DUF747 |
3.7e-83 |
2-310 |
| no_ID |
|
| HMMPanther |
PTHR13317:SF4 |
SUBFAMILY |
7.1e-115 |
2-315 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
1 |
23 |
| 33 |
55 |
| 97 |
119 |
| 158 |
180 |
| 186 |
208 |
| 243 |
265 |
| 277 |
299 |
- Wolf-PSORT
Lj0g3v0338939.1 plas 5, E.R. 3.5, E.R._vacu 3.5, cyto 3, vacu 2.5, nucl_plas 2.5, golg_plas 2.5, cysk_plas 2.5, mito_plas 2.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0338939.1 |
|