Miyakogusa Predicted Gene

Lj0g3v0338909.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JCA6_SOYBN 564 75.3 78.6 (tr|I1JCA6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G17200.1 329 51.7 62.9 | Symbols: DSK2 | ubiquitin family protein | chr2:7482133-7485090 REVERSE LENGTH=551
Medicago Medtr5g023830.5 551 74.5 78.6 | ubiquitin 1, related protein | HC | chr5:9489041-9495512 | 20130731
Soybean Glyma02g04740.1 564 75.3 78.6  
LJGI gnl|LJGI|TC81894 1068 100.0 100.0 similar to UniRef100_A7P8P9 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0338909.1 length: 580 aa.
IPR000449 Ubiquitin-associated/translation elongation factor EF1B, N-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00627 UBA 1.8e-08 539-575
IPR000626 Ubiquitin
Molecular Function GO:0005515 protein binding    
HMMPfam PF00240 ubiquitin 3.2e-17 63-127
HMMSmart SM00213 Ubiquitin 6e-19 57-128
IPR006636 Heat shock chaperonin-binding
HMMSmart SM00727 Heat 1.6 182-219
232-271
384-437
440-475
IPR009060 UBA-like
Molecular Function GO:0005515 protein binding    
superfamily SSF46934 UBA-like 1.5e-14 535-578
IPR015360 XPC-binding domain
Molecular Function GO:0003684 damaged DNA binding    
Biological Process GO:0006289 nucleotide-excision repair    
Biological Process GO:0043161 proteasomal ubiquitin-dependent protein catabolic process    
superfamily SSF101238 XPC-binding 0.015 409-470
IPR015496 Ubiquilin
HMMPanther PTHR10677 UBIQUILIN 6.2e-134 41-578
IPR015940 Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote
HMMSmart SM00165 Ubiquitin 1.1e-06 539-577
ProfileScan PS50030 UBA 12.740 533-578
IPR019955 Ubiquitin supergroup
ProfileScan PS50053 UBIQUITIN_2 21.045 57-126
no_ID  
Gene3D G3DSA:1.10.8.10 no description 1.1e-20 534-577
Gene3D G3DSA:3.10.20.90 no description 7.3e-21 55-134
HMMPfam PF13658 UCH37_bd 5.4e-05 410-500
Seg seg seg NA 132-149
150-192
305-319
470-510
superfamily SSF54236 Ubiquitin-like 3.7e-26 41-148
Wolf-PSORT
Lj0g3v0338909.1	nucl 6, nucl_plas 4.5, cyto 3, chlo 1, mito 1, plas 1, extr 1, golg 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0338909.1