Miyakogusa Predicted Gene

Lj0g3v0335339.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7ZV87_MEDTR 1523 90.6 94.9 (tr|G7ZV87) Multiple C2 and transmembrane domain-containing protein OS=Medicago truncatula GN=MTR_021s0014 PE=4 SV=1

TAIR_pep AT5G06850.1 1373 80.5 89.8 | Symbols: | C2 calcium/lipid-binding plant phosphoribosyltransferase family protein | chr5:2127200-2129584 REVERSE LENGTH=794

Medicago Medtr0291s0010.1 1519 90.9 95.0 | calcium-dependent lipid-binding (CaLB domain) family protein | HC | scaffold0291:5153-2087 | 20130731

Soybean Glyma15g42630.1 1259 73.6 86.5

LJGI gnl|LJGI|FS332866 1532 99.9 99.9 similar to UniRef100_A7PVT4 Cluster: Chromosome chr8 scaffold_34, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_34, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0335339.1 length: 798 aa.

IPR000008 C2 calcium-dependent membrane targeting

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00168 C2 2.5e-16 58-138
221-301
385-479

HMMSmart SM00239 Protein 4.7e-15 57-154
220-318
384-495

IPR008973 C2 calcium/lipid-binding domain, CaLB

Molecular Function GO:0005515 protein binding

superfamily SSF49562 C2 8.4e-27 56-204
219-376
383-540

IPR013583 Phosphoribosyltransferase C-terminal

HMMPfam PF08372 PRT_C 3.4e-80 643-798

IPR018029 C2 membrane targeting protein

ProfileScan PS50004 C2 11.359 58-139
221-303
385-480

no_ID

Gene3D G3DSA:2.60.40.150 no description 1e-27 52-181
214-326
379-519

HMMPanther PTHR10024 SYNAPTOTAGMIN 0 43-797

HMMPanther PTHR10024:SF97 C2 0 43-797

Putative transmembrane regions

From To

TM segments
SOSUI 511 533

629 651

743 765

Wolf-PSORT

Lj0g3v0335339.1 plas 7.5, cyto_plas 5, E.R. 2, pero 2, cyto 1.5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0335339.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7ZV87_MEDTR	1523	90.6	94.9	(tr\|G7ZV87) Multiple C2 and transmembrane domain-containing protein OS=Medicago truncatula GN=MTR_021s0014 PE=4 SV=1
TAIR_pep	AT5G06850.1	1373	80.5	89.8	\| Symbols: \| C2 calcium/lipid-binding plant phosphoribosyltransferase family protein \| chr5:2127200-2129584 REVERSE LENGTH=794
Medicago	Medtr0291s0010.1	1519	90.9	95.0	\| calcium-dependent lipid-binding (CaLB domain) family protein \| HC \| scaffold0291:5153-2087 \| 20130731
Soybean	Glyma15g42630.1	1259	73.6	86.5
LJGI	gnl\|LJGI\|FS332866	1532	99.9	99.9	similar to UniRef100_A7PVT4 Cluster: Chromosome chr8 scaffold_34, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr8 scaffold_34, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)

IPR000008	C2 calcium-dependent membrane targeting
Lj0g3v0335339.1				length: 798 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00168	C2	2.5e-16	58-138 221-301 385-479
HMMSmart	SM00239	Protein	4.7e-15	57-154 220-318 384-495
IPR008973	C2 calcium/lipid-binding domain, CaLB
Molecular Function	GO:0005515	protein binding
superfamily	SSF49562	C2	8.4e-27	56-204 219-376 383-540
IPR013583	Phosphoribosyltransferase C-terminal
HMMPfam	PF08372	PRT_C	3.4e-80	643-798
IPR018029	C2 membrane targeting protein
ProfileScan	PS50004	C2	11.359	58-139 221-303 385-480
no_ID
Gene3D	G3DSA:2.60.40.150	no description	1e-27	52-181 214-326 379-519
HMMPanther	PTHR10024	SYNAPTOTAGMIN	0	43-797
HMMPanther	PTHR10024:SF97	C2	0	43-797