Miyakogusa Predicted Gene

Lj0g3v0330669.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL E2IXG7_MEDTR 451 78.6 85.1 (tr|E2IXG7) Somatic embryogenesis receptor kinase-like protein 3 OS=Medicago truncatula GN=SERKL3 PE=2 SV=1

TAIR_pep AT5G10290.1 299 58.2 71.2 | Symbols: | leucine-rich repeat transmembrane protein kinase family protein | chr5:3235462-3238171 REVERSE LENGTH=613

Medicago Medtr3g087060.3 451 78.6 85.1 | LRR receptor-like kinase | HC | chr3:39473294-39480790 | 20130731

Soybean Glyma11g38060.1 436 78.0 83.4

LJGI --No_Hits--

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0330669.1 length: 300 aa.

IPR001611 Leucine-rich repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00560 LRR_1 0.051 141-163

ProfileScan PS51450 LRR 5.725 34-56
93-115
117-140
141-163

IPR003591 Leucine-rich repeat, typical subtype

HMMSmart SM00369 Leucine-rich 2.3e+02 91-114
115-138
139-162
163-187

IPR011009 Protein kinase-like domain

Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups

superfamily SSF56112 Protein 8.7e-07 271-300

IPR013210 Leucine-rich repeat-containing N-terminal, type 2

HMMPfam PF08263 LRRNT_2 1.2e-09 28-65

IPR013320 Concanavalin A-like lectin/glucanase, subgroup

Gene3D G3DSA:2.60.120.200 no description 1.1e-10 210-300

IPR025875 Leucine rich repeat 4

HMMPfam PF12799 LRR_4 1.2e-09 92-129

no_ID

Gene3D G3DSA:3.80.10.10 no description 7.7e-44 28-198

HMMPanther PTHR24420 FAMILY 3.6e-111 1-300

HMMPanther PTHR24420:SF337SUBFAMILY NOT 3.6e-111 1-300

Seg seg seg NA 7-19
222-244

superfamily SSF52058 L 6.9e-42 22-207

Putative transmembrane regions

From To

TM segments
SOSUI 2 23

66 88

224 245

Wolf-PSORT

Lj0g3v0330669.1 vacu 6, plas 4, cyto 1, extr 1, E.R. 1, golg 1, cyto_E.R. 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0330669.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	E2IXG7_MEDTR	451	78.6	85.1	(tr\|E2IXG7) Somatic embryogenesis receptor kinase-like protein 3 OS=Medicago truncatula GN=SERKL3 PE=2 SV=1
TAIR_pep	AT5G10290.1	299	58.2	71.2	\| Symbols: \| leucine-rich repeat transmembrane protein kinase family protein \| chr5:3235462-3238171 REVERSE LENGTH=613
Medicago	Medtr3g087060.3	451	78.6	85.1	\| LRR receptor-like kinase \| HC \| chr3:39473294-39480790 \| 20130731
Soybean	Glyma11g38060.1	436	78.0	83.4
LJGI	--No_Hits--

IPR001611	Leucine-rich repeat
Lj0g3v0330669.1				length: 300 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00560	LRR_1	0.051	141-163
ProfileScan	PS51450	LRR	5.725	34-56 93-115 117-140 141-163
IPR003591	Leucine-rich repeat, typical subtype
HMMSmart	SM00369	Leucine-rich	2.3e+02	91-114 115-138 139-162 163-187
IPR011009	Protein kinase-like domain
Molecular Function	GO:0016772	transferase activity, transferring phosphorus-containing groups
superfamily	SSF56112	Protein	8.7e-07	271-300
IPR013210	Leucine-rich repeat-containing N-terminal, type 2
HMMPfam	PF08263	LRRNT_2	1.2e-09	28-65
IPR013320	Concanavalin A-like lectin/glucanase, subgroup
Gene3D	G3DSA:2.60.120.200	no description	1.1e-10	210-300
IPR025875	Leucine rich repeat 4
HMMPfam	PF12799	LRR_4	1.2e-09	92-129
no_ID
Gene3D	G3DSA:3.80.10.10	no description	7.7e-44	28-198
HMMPanther	PTHR24420	FAMILY	3.6e-111	1-300
HMMPanther	PTHR24420:SF337SUBFAMILY	NOT	3.6e-111	1-300
Seg	seg	seg	NA	7-19 222-244
superfamily	SSF52058	L	6.9e-42	22-207