Miyakogusa Predicted Gene

Lj0g3v0329159.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J3T2_MEDTR 1514 87.2 91.6 (tr|G7J3T2) ABC transporter D family member OS=Medicago truncatula GN=MTR_3g087350 PE=3 SV=1
TAIR_pep AT4G39850.1 1330 77.0 85.1 | Symbols: PXA1, PED3, CTS, ACN2, AtABCD1 | peroxisomal ABC transporter 1 | chr4:18489220-18496762 FORWARD LENGTH=1337
Medicago Medtr3g087350.2 1515 87.2 91.6 | peroxisomal ABC transporter | HC | chr3:39601157-39588798 | 20130731
Soybean Glyma18g02110.1 1405 86.9 90.4  
LJGI gnl|LJGI|BP042433 1059 100.0 100.0 similar to UniRef100_Q8VWH7 Cluster: Peroxisomal ABC transporter; n=1; Arabidopsis thaliana|Rep: Peroxisomal ABC transporter - Arabidopsis thaliana (Mouse-ear cress), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0329159.1 length: 850 aa.
IPR003439 ABC transporter-like
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1.3e-09 487-609
ProfileScan PS50893 ABC_TRANSPORTER_2 13.832 447-676
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 5.5e-07 472-651
IPR010509 ABC transporter, N-terminal
Biological Process GO:0006810 transport    
Cellular Component GO:0016020 membrane    
HMMPfam PF06472 ABC_membrane_2 6.3e-24 85-359
737-850
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 3.2e-09 70-355
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 581-595
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 10.813 151-341
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1e-40 447-662
no_ID  
Coil coil coiled-coil NA 279-300
Gene3D G3DSA:1.20.1560.10 no description 3.4e-07 145-417
Gene3D G3DSA:3.40.50.300 no description 2.8e-39 447-684
HMMPanther PTHR11384 ATP-BINDING 0 13-714
HMMPanther PTHR11384:SF4 PEROXISOMAL 0 13-714
Seg seg seg NA 17-28
713-726
Putative transmembrane regions
  From To
TM segments
SOSUI		 23 41
337 359
377 399
Wolf-PSORT
Lj0g3v0329159.1	chlo 6, vacu 3, nucl 2, E.R._vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0329159.1