Miyakogusa Predicted Gene
- Lj0g3v0327789.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7LX41_SOYBN |
1496 |
69.3 |
78.3 |
(tr|K7LX41) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT1G77680.1 |
971 |
49.6 |
63.0 |
| Symbols: | Ribonuclease II/R family protein | chr1:29192188-29195963 REVERSE LENGTH=1055 |
| Medicago |
Medtr5g059080.1 |
1339 |
62.7 |
74.1 |
| ribonuclease II family protein | HC | chr5:24380512-24374112 | 20130731 |
| Soybean |
Glyma14g33170.1 |
1470 |
68.7 |
77.1 |
|
| LJGI |
gnl|LJGI|DC594536 |
127 |
100.0 |
100.0 |
homologue to UniRef100_Q9XF04 Cluster: Protein CLAVATA 3 precursor [Contains: MCLV3]; n=1; Arabidopsis thaliana|Rep: Protein CLAVATA 3 precursor [Contains: MCLV3] - Arabidopsis thaliana (Mouse-ear cress), partial (12%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0327789.1 |
length: 1077 aa. |
| IPR001900 |
Ribonuclease II/R |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Molecular Function |
GO:0004540 |
ribonuclease activity |
|
|
| HMMPfam |
PF00773 |
RNB |
4.2e-92 |
494-842 |
| HMMSmart |
SM00955 |
no description |
2.1e-128 |
494-844 |
| IPR022966 |
Ribonuclease II/R, conserved site |
| PatternScan |
PS01175 |
RIBONUCLEASE_II |
NA |
811-835 |
| no_ID |
|
| HMMPanther |
PTHR23355 |
RIBONUCLEASE |
0 |
127-1071 |
| HMMPanther |
PTHR23355:SF22 |
SUBFAMILY |
0 |
127-1071 |
| Seg |
seg |
seg |
NA |
1013-1032 |
- Wolf-PSORT
Lj0g3v0327789.1 nucl 7, chlo 2, golg 2, mito 1, plas 1, E.R. 1, E.R._plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0327789.1 |
|