Miyakogusa Predicted Gene

Lj0g3v0327639.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KP46_SOYBN 465 84.0 90.1 (tr|K7KP46) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G52270.1 310 62.5 76.5 | Symbols: | Transcription initiation factor IIF, beta subunit | chr3:19387180-19388902 REVERSE LENGTH=269
Medicago Medtr3g112490.1 313 59.7 80.2 | transcription initiation factor IIF beta subunit | HC | chr3:52752265-52747840 | 20130731
Soybean Glyma04g03030.1 325 63.1 81.6  
LJGI gnl|LJGI|BP050111 585 99.3 99.3 similar to UniRef100_A7PI78 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0327639.1 length: 263 aa.
IPR003196 Transcription initiation factor IIF, beta subunit
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005674 transcription factor TFIIF complex    
Biological Process GO:0006367 transcription initiation from RNA polymerase II promoter    
HMMPanther PTHR10445 GENERAL 2.3e-75 1-261
HMMPfam PF02270 TFIIF_beta 2.2e-39 20-113
108-260
IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0006367 transcription initiation from RNA polymerase II promoter    
superfamily SSF50916 Rap30/74 2.4e-12 15-129
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 6.6e-29 194-260
no_ID  
HMMPanther PTHR10445:SF0 GENERAL 2.3e-75 1-261
Seg seg seg NA 66-73
superfamily SSF46785 "Winged 2.1e-22 194-262
Wolf-PSORT
Lj0g3v0327639.1	nucl 12.5, cyto_nucl 7
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0327639.1