Miyakogusa Predicted Gene
- Lj0g3v0327159.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SR42_LOTJA |
375 |
98.9 |
98.9 |
(tr|I3SR42) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G23910.1 |
111 |
40.9 |
59.1 |
| Symbols: | BEST Arabidopsis thaliana protein match is: RNA-directed DNA polymerase (reverse transcriptase)-related family protein (TAIR:AT3G24255.2); Has 562 Blast hits to 532 proteins in 147 species: Archae - 28; Bacteria - 51; Metazoa - 157; Fungi - 82; Plants - 85; Viruses - 6; Other Eukaryotes - 153 (source: NCBI BLink). | chr3:8636594-8639344 REVERSE LENGTH=421 |
| Medicago |
--No_Hits--
|
|
|
|
|
| Soybean |
Glyma11g36540.1 |
261 |
69.5 |
79.1 |
|
| LJGI |
gnl|LJGI|TC70284 |
1205 |
100.0 |
100.0 |
weakly similar to UniRef100_A7Q706 Cluster: Chromosome chr5 scaffold_58, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_58, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0327159.2 |
length: 233 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Seg |
seg |
seg |
NA |
15-46 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
7 |
29 |
- Wolf-PSORT
Lj0g3v0327159.2 extr 5, vacu 4, chlo 1, cyto 1, mito 1, plas 1, E.R. 1, chlo_mito 1, E.R._plas 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0327159.2 |
|