Miyakogusa Predicted Gene

Lj0g3v0326409.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LD94_SOYBN 1795 80.2 87.2 (tr|K7LD94) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G01130.1 1574 71.4 83.3 | Symbols: | DEA(D/H)-box RNA helicase family protein | chr2:88847-94635 REVERSE LENGTH=1113
Medicago Medtr1g109170.2 1746 78.2 86.7 | ATP-dependent RNA helicase DHX36-like protein | HC | chr1:49342716-49360401 | 20130731
Soybean Glyma20g25800.1 1682 77.3 84.1  
LJGI gnl|LJGI|FS318755 880 88.7 88.7 similar to UniRef100_A7P3F8 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0326409.1 length: 1096 aa.
IPR001159 Double-stranded RNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003725 double-stranded RNA binding    
HMMPfam PF00035 dsrm 1.4e-08 1009-1071
HMMSmart SM00358 Double-stranded 0.0056 1009-1072
ProfileScan PS50137 DS_RBD 8.591 1008-1073
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.2e-11 517-601
HMMSmart SM00490 helicase 6.4e-14 496-602
ProfileScan PS51194 HELICASE_CTER 15.309 468-642
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 8.3e-26 664-754
HMMSmart SM00847 Helicase 2.9e-33 664-754
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.8e-06 213-366
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 2.4e-14 793-902
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 8.5e-27 202-395
ProfileScan PS51192 HELICASE_ATP_BIND_1 21.072 214-381
IPR014720 Double-stranded RNA-binding-like domain
Gene3D G3DSA:3.30.160.20 no description 4.4e-10 1007-1071
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.2e-72 213-762
no_ID  
Gene3D G3DSA:3.40.50.300 no description 9.1e-11 204-364
470-610
HMMPanther PTHR18934 ATP-DEPENDENT 0 17-950
HMMPanther PTHR18934:SF68 SUBFAMILY 0 17-950
Seg seg seg NA 1054-1069
superfamily SSF54768 dsRNA-binding 2.5e-11 1002-1087
Wolf-PSORT
Lj0g3v0326409.1	nucl 7, plas 3, cyto 2, cysk_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0326409.1