Miyakogusa Predicted Gene
- Lj0g3v0326369.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9RZU0_RICCO |
422 |
58.6 |
75.9 |
(tr|B9RZU0) Poly(A) polymerase, putative OS=Ricinus communis GN=RCOM_1001380 PE=4 SV=1 |
| TAIR_pep |
AT3G06560.1 |
336 |
52.9 |
70.0 |
| Symbols: PAPS3 | poly(A) polymerase 3 | chr3:2044443-2047034 FORWARD LENGTH=507 |
| Medicago |
Medtr8g106560.2 |
150 |
33.9 |
51.1 |
| poly(A) polymerase-like protein | HC | chr8:44967321-44960896 | 20130731 |
| Soybean |
Glyma09g31080.1 |
153 |
33.2 |
50.9 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0326369.1 |
length: 336 aa. |
| IPR007010 |
Poly(A) polymerase, RNA-binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Molecular Function |
GO:0004652 |
polynucleotide adenylyltransferase activity |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0043631 |
RNA polyadenylation |
|
|
| Gene3D |
G3DSA:3.30.70.590 |
no description |
3.3e-13 |
170-264 |
| HMMPfam |
PF04926 |
PAP_RNA-bind |
2.5e-12 |
172-283 |
| IPR007012 |
Poly(A) polymerase, central domain |
| Molecular Function |
GO:0004652 |
polynucleotide adenylyltransferase activity |
|
|
| Biological Process |
GO:0043631 |
RNA polyadenylation |
|
|
| HMMPfam |
PF04928 |
PAP_central |
4.3e-58 |
1-166 |
| IPR011068 |
Nucleotidyltransferase, class I, C-terminal-like |
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Molecular Function |
GO:0016779 |
nucleotidyltransferase activity |
|
|
| Biological Process |
GO:0031123 |
RNA 3'-end processing |
|
|
| superfamily |
SSF55003 |
PAP/Archaeal |
9.5e-20 |
168-285 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.1410.10 |
no description |
3.7e-51 |
2-166 |
| HMMPanther |
PTHR10682 |
POLY(A) |
4.9e-98 |
1-283 |
| HMMPanther |
PTHR10682:SF5 |
POLY(A) |
4.9e-98 |
1-283 |
| Seg |
seg |
seg |
NA |
46-60 |
| superfamily |
SSF81631 |
PAP/OAS1 |
6.3e-45 |
26-167 |
- Wolf-PSORT
Lj0g3v0326369.1 cyto 8, nucl 2, E.R. 2, mito 1, plas 1, cysk_nucl 1, E.R._vacu 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0326369.1 |
|