Miyakogusa Predicted Gene

Lj0g3v0326259.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1JJC2_SOYBN 555 74.9 85.1 (tr|I1JJC2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G72050.2 384 51.2 60.5 | Symbols: TFIIIA | transcription factor IIIA | chr1:27115082-27117228 FORWARD LENGTH=412

Medicago Medtr8g039590.1 74.7 80.0 85.0 | hypothetical protein | LC | chr8:14719961-14717313 | 20130731

Soybean Glyma02g46270.1 555 74.9 85.1

LJGI gnl|LJGI|TC63039 1136 100.0 100.0 weakly similar to UniRef100_A7PTH8 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0326259.1 length: 359 aa.

IPR007087 Zinc finger, C2H2

method AccNumber shortName E-value location

Molecular Function GO:0008270 zinc ion binding

HMMPfam PF00096 zf-C2H2 0.00096 63-84
90-114
119-144
159-183

PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 64-84
92-114
121-144
161-183
193-216
251-274
282-306

ProfileScan PS50157 ZINC_FINGER_C2H2_2 12.715 62-89
90-119
119-149
159-188
249-279

IPR013087 Zinc finger C2H2-type/integrase DNA-binding domain

Molecular Function GO:0003676 nucleic acid binding

Gene3D G3DSA:3.30.160.60 no description 3.6e-05 60-85
86-117
118-140
155-183
230-271
273-303

IPR015880 Zinc finger, C2H2-like

HMMSmart SM00355 zinc 5.7 19-41
62-84
90-114
119-144
159-183
191-216
219-240
249-274
280-306

no_ID

HMMPanther PTHR11389 ZINC 1.5e-51 63-344

HMMPanther PTHR11389:SF381ZINC FINGER, 1.5e-51 63-344

HMMPfam PF13894 zf-C2H2_4 0.11 196-216
249-274

Seg seg seg NA 40-57

superfamily SSF57667 C2H2 0.0045 60-114
226-291
117-183
169-225
17-46

Wolf-PSORT

Lj0g3v0326259.1 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0326259.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1JJC2_SOYBN	555	74.9	85.1	(tr\|I1JJC2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G72050.2	384	51.2	60.5	\| Symbols: TFIIIA \| transcription factor IIIA \| chr1:27115082-27117228 FORWARD LENGTH=412
Medicago	Medtr8g039590.1	74.7	80.0	85.0	\| hypothetical protein \| LC \| chr8:14719961-14717313 \| 20130731
Soybean	Glyma02g46270.1	555	74.9	85.1
LJGI	gnl\|LJGI\|TC63039	1136	100.0	100.0	weakly similar to UniRef100_A7PTH8 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (46%)

IPR007087	Zinc finger, C2H2
Lj0g3v0326259.1				length: 359 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0008270	zinc ion binding
HMMPfam	PF00096	zf-C2H2	0.00096	63-84 90-114 119-144 159-183
PatternScan	PS00028	ZINC_FINGER_C2H2_1	NA	64-84 92-114 121-144 161-183 193-216 251-274 282-306
ProfileScan	PS50157	ZINC_FINGER_C2H2_2	12.715	62-89 90-119 119-149 159-188 249-279
IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Molecular Function	GO:0003676	nucleic acid binding
Gene3D	G3DSA:3.30.160.60	no description	3.6e-05	60-85 86-117 118-140 155-183 230-271 273-303
IPR015880	Zinc finger, C2H2-like
HMMSmart	SM00355	zinc	5.7	19-41 62-84 90-114 119-144 159-183 191-216 219-240 249-274 280-306
no_ID
HMMPanther	PTHR11389	ZINC	1.5e-51	63-344
HMMPanther	PTHR11389:SF381ZINC	FINGER,	1.5e-51	63-344
HMMPfam	PF13894	zf-C2H2_4	0.11	196-216 249-274
Seg	seg	seg	NA	40-57
superfamily	SSF57667	C2H2	0.0045	60-114 226-291 117-183 169-225 17-46