Miyakogusa Predicted Gene

Lj0g3v0324319.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MKC7_SOYBN 610 52.1 58.0 (tr|I1MKC7) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT4G00800.1 387 56.3 66.8 | Symbols: | transducin family protein / WD-40 repeat family protein | chr4:337114-345581 REVERSE LENGTH=1913
Medicago Medtr8g024320.1 518 74.1 77.3 | transducin family protein/WD-40 repeat protein | HC | chr8:8932346-8918975 | 20130731
Soybean Glyma16g02100.1 590 50.0 55.7  
LJGI gnl|LJGI|CN825738 599 100.0 100.0 weakly similar to UniRef100_A1W3F5 Cluster: Phospholipid/glycerol acyltransferase; n=1; Acidovorax sp. JS42|Rep: Phospholipid/glycerol acyltransferase - Acidovorax sp. (strain JS42), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0324319.1 length: 683 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMSmart SM00320 WD40 0.0032 432-473
ProfileScan PS50082 WD_REPEATS_2 10.475 448-482
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.1e-09 393-522
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 9.916 441-482
superfamily SSF50978 WD40 8.6e-10 394-523
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 460-474
no_ID  
Coil coil coiled-coil NA 301-329
HMMPanther PTHR12816 RETINOBLASTOMA 1.2e-162 290-683
HMMPanther PTHR12816:SF15 UNKNOWN 1.2e-162 290-683
Seg seg seg NA 57-79
115-136
146-165
283-314
328-340
572-591
597-610
652-664
Wolf-PSORT
Lj0g3v0324319.1	chlo 4, cyto 3, pero 3, cyto_pero 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0324319.1