Miyakogusa Predicted Gene
- Lj0g3v0324239.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3T9S6_LOTJA |
361 |
89.9 |
89.9 |
(tr|I3T9S6) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT2G46230.1 |
302 |
74.6 |
82.2 |
| Symbols: | PIN domain-like family protein | chr2:18984459-18985850 REVERSE LENGTH=196 |
| Medicago |
Medtr7g116720.1 |
343 |
83.3 |
88.9 |
| rRNA-processing protein PIN domain protein | HC | chr7:48203910-48200196 | 20130731 |
| Soybean |
Glyma13g38690.3 |
354 |
87.4 |
89.9 |
|
| LJGI |
gnl|LJGI|TC75070 |
1183 |
100.0 |
100.0 |
similar to UniRef100_A7PZQ1 Cluster: Chromosome chr15 scaffold_40, whole genome shotgun sequence; n=3; Vitis vinifera|Rep: Chromosome chr15 scaffold_40, whole genome shotgun sequence - Vitis vinifera (Grape), partial (95%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0324239.1 |
length: 198 aa. |
| IPR006596 |
Nucleotide binding protein, PINc |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMSmart |
SM00670 |
Large |
1.9e-14 |
65-164 |
| IPR006984 |
Protein of unknown function DUF652 |
| HMMPanther |
PTHR12416 |
UNCHARACTERIZED |
1.2e-104 |
2-192 |
| HMMPfam |
PF04900 |
Fcf1 |
9.2e-42 |
89-186 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.1010 |
no description |
3.3e-39 |
64-188 |
| Seg |
seg |
seg |
NA |
26-43 |
| superfamily |
SSF88723 |
PIN |
1.2e-32 |
63-188 |
- Wolf-PSORT
Lj0g3v0324239.1 nucl 7, cyto 3, chlo 1, mito 1, plas 1, extr 1, chlo_mito 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0324239.1 |
|