Miyakogusa Predicted Gene

Lj0g3v0323229.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LFQ6_SOYBN 1174 83.1 91.0 (tr|K7LFQ6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G50390.1 900 62.1 77.6 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr5:20520789-20522980 REVERSE LENGTH=701
Medicago Medtr3g012530.1 1068 73.8 83.3 | pentatricopeptide (PPR) repeat protein | HC | chr3:3530268-3532784 | 20130731
Soybean Glyma08g17040.1 1105 78.9 86.3  
LJGI gnl|LJGI|FS325460 1211 100.0 100.0 similar to UniRef100_A7PHH0 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0323229.1 length: 683 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.88 149-175
177-202
251-275
452-473
518-546
HMMPfam PF13041 PPR_2 1.8e-12 276-322
376-423
HMMPfam PF13812 PPR_3 0.5 111-143
HMMTigr TIGR00756 PPR: 5.5e-08 112-144
280-311
351-378
379-412
ProfileScan PS51375 PPR 7.848 109-143
144-178
245-275
210-244
276-310
311-345
377-411
346-376
412-447
448-478
514-548
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 5.8e-09 345-538
no_ID  
HMMPanther PTHR24015 FAMILY 0 9-683
HMMPanther PTHR24015:SF151OS03G0849800 PROTEIN 0 9-683
HMMPfam PF14432 DYW_deaminase 3.1e-15 557-673
Wolf-PSORT
Lj0g3v0323229.1	nucl 8, cyto 4, cysk_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0323229.1