Miyakogusa Predicted Gene

Lj0g3v0322239.3
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9RLT0_RICCO 1285 55.8 68.4 (tr|B9RLT0) ATP binding protein, putative OS=Ricinus communis GN=RCOM_1470570 PE=4 SV=1
TAIR_pep AT5G07810.1 1180 53.5 67.7 | Symbols: | SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein | chr5:2491412-2498484 REVERSE LENGTH=1190
Medicago Medtr4g124090.1 252 32.0 49.9 | chromatin-remodeling complex ATPase chain | HC | chr4:51253707-51244371 | 20130731
Soybean Glyma06g21530.1 602 76.3 85.4  
LJGI gnl|LJGI|DC592870 1094 98.3 98.3 similar to UniRef100_A7PDF4 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (16%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0322239.3 length: 1163 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 7.1e-32 200-444
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.4e-07 529-607
HMMSmart SM00490 helicase 2.9e-09 524-607
ProfileScan PS51194 HELICASE_CTER 11.575 499-653
IPR002711 HNH endonuclease
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004519 endonuclease activity    
HMMPfam PF01844 HNH 8.5e-08 1061-1095
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 7.5e-19 193-379
ProfileScan PS51192 HELICASE_ATP_BIND_1 19.349 206-370
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.3e-38 142-421
305-660
no_ID  
Coil coil coiled-coil NA 2-25
Gene3D G3DSA:3.40.50.300 no description 1.2e-10 186-364
503-641
HMMPanther PTHR10799 SWI/SNF-RELATED 1.6e-155 175-724
HMMPanther PTHR10799:SF43 SWI/SNF-RELATED 1.6e-155 175-724
Seg seg seg NA 6-25
53-66
84-96
430-444
564-576
898-909
Wolf-PSORT
Lj0g3v0322239.3	nucl 5, cyto 5, cyto_nucl 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0322239.3