Miyakogusa Predicted Gene
- Lj0g3v0319519.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S957_LOTJA |
399 |
99.5 |
99.5 |
(tr|I3S957) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT4G00160.1 |
135 |
30.8 |
46.2 |
| Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr4:63465-65365 FORWARD LENGTH=453 |
| Medicago |
Medtr7g098510.1 |
226 |
41.0 |
55.9 |
| cyclin-like F-box protein | LC | chr7:39437115-39438581 | 20130731 |
| Soybean |
Glyma08g46320.1 |
245 |
40.6 |
60.0 |
|
| LJGI |
gnl|LJGI|TC61348 |
2313 |
99.4 |
99.4 |
similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_111, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0319519.1 |
length: 395 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
3.8e-07 |
14-52 |
| ProfileScan |
PS50181 |
FBOX |
9.630 |
12-67 |
| superfamily |
SSF81383 |
F-box |
2.8e-14 |
10-107 |
| IPR006566 |
FBD |
| HMMPfam |
PF08387 |
FBD |
9.3e-14 |
320-367 |
| HMMSmart |
SM00579 |
domain |
3.1e-06 |
326-395 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
1.5e-14 |
9-309 |
| HMMPanther |
PTHR32484 |
FAMILY |
3.4e-50 |
6-395 |
| Seg |
seg |
seg |
NA |
374-385 |
| superfamily |
SSF52047 |
RNI-like |
2.7e-08 |
92-309 |
- Wolf-PSORT
Lj0g3v0319519.1 chlo 4, mito 3.5, cyto_mito 2.5, nucl 2, cyto 2, plas 2, cyto_nucl 2, nucl_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0319519.1 |
Not targeted |
-39.307 |
-0.435 |
-5.844 |
51.75% |
-33.028
|