Miyakogusa Predicted Gene
- Lj0g3v0319339.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7J0B1_MEDTR |
476 |
77.3 |
86.7 |
(tr|G7J0B1) Rab5 GDP/GTP exchange factor OS=Medicago truncatula GN=MTR_3g009180 PE=4 SV=1 |
| TAIR_pep |
AT3G19770.1 |
251 |
43.3 |
62.8 |
| Symbols: ATVPS9A, VPS9A, VPS9 | Vacuolar sorting protein 9 (VPS9) domain | chr3:6866916-6869114 FORWARD LENGTH=520 |
| Medicago |
Medtr3g009180.1 |
481 |
78.0 |
87.5 |
| vacuolar protein sorting-associated protein VPS9 | HC | chr3:1829947-1834344 | 20130731 |
| Soybean |
Glyma04g13010.1 |
441 |
71.8 |
79.4 |
|
| LJGI |
gnl|LJGI|GO020435 |
892 |
98.4 |
98.4 |
similar to UniRef100_A7Q7R9 Cluster: Chromosome chr18 scaffold_61, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_61, whole genome shotgun sequence - Vitis vinifera (Grape), partial (56%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0319339.1 |
length: 309 aa. |
| IPR003123 |
Vacuolar sorting protein 9 |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF02204 |
VPS9 |
3.6e-30 |
60-162 |
| ProfileScan |
PS51205 |
VPS9 |
39.630 |
24-167 |
| IPR013995 |
Vacuolar sorting protein 9, subgroup |
| HMMSmart |
SM00167 |
Domain |
3.8e-23 |
57-176 |
| no_ID |
|
| HMMPanther |
PTHR23101 |
RAB |
3.8e-65 |
2-180 |
| HMMPanther |
PTHR23101:SF25 |
SUBFAMILY |
3.8e-65 |
2-180 |
| superfamily |
SSF109993 |
VPS9 |
5.7e-48 |
1-179 |
- Wolf-PSORT
Lj0g3v0319339.1 cyto 7.5, cyto_E.R. 4.5, chlo 2, nucl 2, vacu 1, cysk 1, chlo_mito 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0319339.1 |
|