Miyakogusa Predicted Gene

Lj0g3v0316999.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7M8G3_SOYBN 1328 78.8 87.3 (tr|K7M8G3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G16860.1 1056 61.5 77.2 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:5543834-5546386 FORWARD LENGTH=850
Medicago Medtr1g040635.1 1200 77.9 86.4 | pentatricopeptide (PPR) repeat protein | HC | chr1:15046911-15042560 | 20130731
Soybean Glyma14g39710.1 1190 82.8 90.2  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0316999.1 length: 857 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.002 169-198
276-301
304-334
418-438
524-549
625-649
HMMPfam PF13041 PPR_2 9.4e-09 200-247
337-384
446-495
550-597
HMMTigr TIGR00756 PPR: 0.0005 202-237
276-303
304-338
339-373
448-477
524-550
552-585
625-648
ProfileScan PS51375 PPR 7.443 96-130
200-235
166-196
131-165
302-336
271-301
337-371
372-402
446-480
413-443
550-584
519-549
621-655
585-620
687-721
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.3e-10 516-578
no_ID  
HMMPanther PTHR24015 FAMILY 0 34-857
HMMPanther PTHR24015:SF128SUBFAMILY NOT 0 34-857
HMMPfam PF14432 DYW_deaminase 1.2e-22 724-847
Seg seg seg NA 2-19
25-39
superfamily SSF48452 TPR-like 0.0037 175-577
437-580
Putative transmembrane regions
  From To
TM segments
SOSUI		 8 30
160 182
Wolf-PSORT
Lj0g3v0316999.1	plas 8, E.R. 3, chlo 2, E.R._vacu 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0316999.1