Miyakogusa Predicted Gene

Lj0g3v0316759.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NCL9_SOYBN 514 82.2 88.6 (tr|I1NCL9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G61790.1 466 84.5 93.2 | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326
Medicago Medtr8g027520.1 512 82.4 87.4 | ubiquitin ligase SINAT3 | HC | chr8:9833064-9837489 | 20130731
Soybean Glyma19g44520.1 514 82.2 88.6  
LJGI gnl|LJGI|TC66464 648 85.3 85.3 homologue to UniRef100_A8W461 Cluster: SINA2; n=1; Medicago truncatula|Rep: SINA2 - Medicago truncatula (Barrel medic), partial (89%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0316759.2 length: 313 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 9.421 33-69
IPR004162 Seven-in-absentia protein, sina
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPanther PTHR10315 SEVEN 1.5e-117 22-272
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 TRAF 8.7e-46 86-276
IPR013010 Zinc finger, SIAH-type
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS51081 ZF_SIAH 14.134 86-146
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.1e-08 24-98
IPR013323 SIAH-type domain
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Molecular Function GO:0008270 zinc ion binding    
Biological Process GO:0016567 protein ubiquitination    
Gene3D G3DSA:3.90.890.10 no description 1.2e-19 99-141
IPR018121 Seven-in-absentia protein, TRAF-like domain
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPfam PF03145 Sina 4.3e-70 75-272
no_ID  
Gene3D G3DSA:2.60.210.10 no description 5e-51 152-272
superfamily SSF57850 RING/U-box 1.8e-07 25-81
Wolf-PSORT
Lj0g3v0316759.2	nucl 6, cyto 4, mito 1, plas 1, extr 1, pero 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0316759.2