Miyakogusa Predicted Gene
- Lj0g3v0316659.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MNI8_SOYBN |
405 |
90.0 |
95.2 |
(tr|K7MNI8) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G78910.1 |
364 |
73.3 |
86.0 |
| Symbols: | Pseudouridine synthase family protein | chr1:29665269-29667557 FORWARD LENGTH=478 |
| Medicago |
Medtr7g029385.1 |
395 |
87.2 |
93.8 |
| RNA pseudouridine synthase | HC | chr7:10453073-10460793 | 20130731 |
| Soybean |
Glyma17g35030.1 |
406 |
90.0 |
95.2 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0316659.1 |
length: 266 aa. |
| IPR006145 |
Pseudouridine synthase, RsuA/RluB/C/D/E/F |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0001522 |
pseudouridine synthesis |
|
|
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Biological Process |
GO:0009451 |
RNA modification |
|
|
| Molecular Function |
GO:0009982 |
pseudouridine synthase activity |
|
|
| HMMPfam |
PF00849 |
PseudoU_synth_2 |
2.2e-11 |
63-148 |
| IPR020103 |
Pseudouridine synthase, catalytic domain |
| Biological Process |
GO:0001522 |
pseudouridine synthesis |
|
|
| Molecular Function |
GO:0003723 |
RNA binding |
|
|
| Biological Process |
GO:0009451 |
RNA modification |
|
|
| Molecular Function |
GO:0009982 |
pseudouridine synthase activity |
|
|
| superfamily |
SSF55120 |
Pseudouridine |
3.9e-20 |
54-247 |
| no_ID |
|
| HMMPanther |
PTHR10436 |
RNA |
2.9e-65 |
65-245 |
| HMMPanther |
PTHR10436:SF42 |
RNA |
2.9e-65 |
65-245 |
- Wolf-PSORT
Lj0g3v0316659.1 chlo 10, cyto 2, extr 1, pero 1, cyto_nucl 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0316659.1 |
|