Miyakogusa Predicted Gene
- Lj0g3v0316609.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7L2U8_SOYBN |
702 |
73.1 |
83.3 |
(tr|K7L2U8) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G29120.1 |
257 |
34.6 |
53.8 |
| Symbols: ATGLR2.7, GLR2.7 | glutamate receptor 2.7 | chr2:12511479-12515893 REVERSE LENGTH=952 |
| Medicago |
Medtr4g087925.1 |
740 |
75.6 |
86.3 |
| glutamate receptor 3.4 | HC | chr4:34604354-34607909 | 20130731 |
| Soybean |
Glyma07g32490.1 |
702 |
73.1 |
83.3 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0316609.1 |
length: 466 aa. |
| IPR001638 |
Extracellular solute-binding protein, family 3 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005215 |
transporter activity |
|
|
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0030288 |
outer membrane-bounded periplasmic space |
|
|
| HMMPfam |
PF00497 |
SBP_bac_3 |
1.7e-13 |
337-423 |
| IPR001828 |
Extracellular ligand-binding receptor |
| HMMPfam |
PF01094 |
ANF_receptor |
2.8e-32 |
4-255 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.190.10 |
no description |
2.8e-32 |
316-464 |
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
7.1e-16 |
19-191 |
| HMMPanther |
PTHR18966 |
IONOTROPIC |
6.8e-125 |
2-465 |
| HMMPanther |
PTHR18966:SF6 |
GLUTAMATE |
6.8e-125 |
2-465 |
| superfamily |
SSF53822 |
Periplasmic |
4.5e-41 |
4-313 |
| superfamily |
SSF53850 |
Periplasmic |
8.4e-27 |
287-444 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
437 |
459 |
- Wolf-PSORT
Lj0g3v0316609.1 chlo 6, golg 4, plas 2, nucl 1, cyto 1, cyto_nucl 1, cysk_plas 1, E.R._plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0316609.1 |
|