Miyakogusa Predicted Gene
- Lj0g3v0316399.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LFC1_SOYBN |
219 |
88.5 |
94.7 |
(tr|I1LFC1) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT3G55400.1 |
162 |
72.0 |
86.0 |
| Symbols: OVA1 | methionyl-tRNA synthetase / methionine--tRNA ligase / MetRS (cpMetRS) | chr3:20535809-20538999 REVERSE LENGTH=616 |
| Medicago |
Medtr1g115295.1 |
210 |
86.0 |
92.1 |
| methionyl-tRNA synthetase | HC | chr1:52009887-52001896 | 20130731 |
| Soybean |
Glyma10g43550.1 |
219 |
88.5 |
94.7 |
|
| LJGI |
gnl|LJGI|TC80990 |
509 |
93.8 |
93.8 |
similar to UniRef100_A7PIX8 Cluster: Chromosome chr13 scaffold_17, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr13 scaffold_17, whole genome shotgun sequence - Vitis vinifera (Grape), partial (62%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0316399.1 |
length: 116 aa. |
| IPR009080 |
Aminoacyl-tRNA synthetase, class 1a, anticodon-binding |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0004812 |
aminoacyl-tRNA ligase activity |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0006418 |
tRNA aminoacylation for protein translation |
|
|
| superfamily |
SSF47323 |
Anticodon-binding |
3.8e-17 |
1-99 |
| no_ID |
|
| Gene3D |
G3DSA:1.10.730.10 |
no description |
4.4e-17 |
1-99 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
29 |
51 |
- Wolf-PSORT
Lj0g3v0316399.1 chlo 9, mito 2, nucl 1, cyto 1, plas 1, cyto_nucl 1, cyto_mito 1, nucl_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0316399.1 |
|