Miyakogusa Predicted Gene

Lj0g3v0315359.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LBW4_SOYBN 288 62.9 70.5 (tr|I1LBW4) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT5G16260.1 171 46.6 58.7 | Symbols: ELF9 | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:5311363-5315496 FORWARD LENGTH=519

Medicago Medtr1g078210.1 211 53.7 63.8 | RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr1:35008732-35001604 | 20130731

Soybean Glyma20g36110.1 251 59.5 69.6

LJGI gnl|LJGI|TC72660 1195 99.2 99.2 weakly similar to UniRef100_A7R292 Cluster: Chromosome undetermined scaffold_409, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_409, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0315359.1 length: 233 aa.

IPR003169 GYF

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

superfamily SSF55277 GYF 5.8e-06 20-78

IPR025640 Domain of unknown function DUF4339

HMMPfam PF14237 DUF4339 5.5e-12 23-67

no_ID

Coil coil coiled-coil NA 89-110

Seg seg seg NA 136-150
197-215

Wolf-PSORT

Lj0g3v0315359.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0315359.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LBW4_SOYBN	288	62.9	70.5	(tr\|I1LBW4) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT5G16260.1	171	46.6	58.7	\| Symbols: ELF9 \| RNA binding (RRM/RBD/RNP motifs) family protein \| chr5:5311363-5315496 FORWARD LENGTH=519
Medicago	Medtr1g078210.1	211	53.7	63.8	\| RNA recognition motif, a.k.a. RRM, RBD protein \| HC \| chr1:35008732-35001604 \| 20130731
Soybean	Glyma20g36110.1	251	59.5	69.6
LJGI	gnl\|LJGI\|TC72660	1195	99.2	99.2	weakly similar to UniRef100_A7R292 Cluster: Chromosome undetermined scaffold_409, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_409, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)

IPR003169	GYF
Lj0g3v0315359.1				length: 233 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
superfamily	SSF55277	GYF	5.8e-06	20-78
IPR025640	Domain of unknown function DUF4339
HMMPfam	PF14237	DUF4339	5.5e-12	23-67
no_ID
Coil	coil	coiled-coil	NA	89-110
Seg	seg	seg	NA	136-150 197-215