Miyakogusa Predicted Gene

Lj0g3v0314629.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7L9I3_SOYBN 955 72.3 82.3 (tr|K7L9I3) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT1G23450.1 669 52.7 70.7 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:8324698-8326697 FORWARD LENGTH=666
Medicago Medtr8g065040.1 962 72.3 83.8 | PPR containing plant-like protein | HC | chr8:27316294-27314321 | 20130731
Soybean Glyma08g39320.1 895 73.7 83.9  
LJGI gnl|LJGI|FS327854 1201 99.8 99.8 weakly similar to UniRef100_A7QNZ8 Cluster: Chromosome chr1 scaffold_135, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_135, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0314629.1 length: 695 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.72 143-172
310-337
488-507
HMMPfam PF12854 PPR_1 3.2e-06 580-608
HMMPfam PF13041 PPR_2 7.4e-08 206-253
512-559
HMMPfam PF13812 PPR_3 0.016 412-444
HMMTigr TIGR00756 PPR: 1e-07 209-241
413-446
515-549
ProfileScan PS51375 PPR 7.684 76-110
140-174
206-240
175-205
241-275
308-342
410-444
379-409
343-377
513-547
482-512
548-578
584-614
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.6e-05 591-679
no_ID  
HMMPanther PTHR24015 FAMILY 6.2e-160 61-695
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 6.2e-160 61-695
Seg seg seg NA 600-609
Wolf-PSORT
Lj0g3v0314629.1	chlo 7, mito 6.5, cyto_mito 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0314629.1