Miyakogusa Predicted Gene
- Lj0g3v0313629.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JLN9_SOYBN |
295 |
86.6 |
92.1 |
(tr|I1JLN9) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G09320.1 |
230 |
71.2 |
82.8 |
| Symbols: | DHHC-type zinc finger family protein | chr3:2862142-2864113 REVERSE LENGTH=286 |
| Medicago |
Medtr4g021795.1 |
283 |
84.0 |
89.6 |
| DHHC-type zinc finger protein | HC | chr4:7250882-7256242 | 20130731 |
| Soybean |
Glyma03g12460.1 |
295 |
86.6 |
92.1 |
|
| LJGI |
gnl|LJGI|TC58395 |
571 |
100.0 |
100.0 |
similar to UniRef100_A7PNP4 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (72%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0313629.2 |
length: 162 aa. |
| IPR001594 |
Zinc finger, DHHC-type, palmitoyltransferase |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF01529 |
zf-DHHC |
6.1e-21 |
1-95 |
| ProfileScan |
PS50216 |
ZF_DHHC |
15.487 |
1-25 |
| no_ID |
|
| HMMPanther |
PTHR22883 |
ZINC |
1.4e-42 |
1-153 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
20 |
42 |
| 59 |
81 |
- Wolf-PSORT
Lj0g3v0313629.2 vacu 9, E.R. 2, mito 1, extr 1, golg 1, E.R._plas 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0313629.2 |
|