Miyakogusa Predicted Gene
- Lj0g3v0313299.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KW92_SOYBN |
1012 |
89.8 |
94.3 |
(tr|K7KW92) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G08110.1 |
707 |
65.4 |
77.5 |
| Symbols: | nucleic acid binding;ATP-dependent helicases;ATP binding;helicases;ATP-dependent helicases | chr5:2594854-2600114 REVERSE LENGTH=1141 |
| Medicago |
Medtr2g461560.1 |
989 |
86.7 |
92.8 |
| DEAD-box ATP-dependent RNA helicase, putative | HC | chr2:25426629-25443935 | 20130731 |
| Soybean |
Glyma06g22750.1 |
869 |
89.7 |
94.0 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0313299.2 |
length: 540 aa. |
| IPR001650 |
Helicase, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| Molecular Function |
GO:0004386 |
helicase activity |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00271 |
Helicase_C |
3.3e-10 |
184-251 |
| HMMSmart |
SM00490 |
helicase |
2.9e-12 |
172-253 |
| ProfileScan |
PS51194 |
HELICASE_CTER |
12.994 |
138-294 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
6.2e-30 |
17-270 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
7.1e-19 |
141-299 |
| HMMPanther |
PTHR24031 |
FAMILY |
4.4e-119 |
1-337 |
| HMMPanther |
PTHR24031:SF122SUBFAMILY |
NOT |
4.4e-119 |
1-337 |
- Wolf-PSORT
Lj0g3v0313299.2 cyto 5, chlo 3, nucl 3, mito 3, chlo_mito 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0313299.2 |
|