Miyakogusa Predicted Gene

Lj0g3v0312759.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LXJ6_SOYBN 1096 85.7 90.3 (tr|I1LXJ6) Uncharacterized protein OS=Glycine max PE=3 SV=1

TAIR_pep AT1G64550.1 1028 79.6 86.5 | Symbols: ATGCN3, GCN3 | general control non-repressible 3 | chr1:23968850-23973369 FORWARD LENGTH=715

Medicago Medtr3g080970.1 1078 84.3 89.5 | ABC transporter F family-like protein | HC | chr3:36645188-36654918 | 20130731

Soybean Glyma13g10530.1 1096 85.7 90.3

LJGI gnl|LJGI|TC78821 2379 99.9 99.9 homologue to UniRef100_A7QU38 Cluster: Chromosome chr2 scaffold_176, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_176, whole genome shotgun sequence - Vitis vinifera (Grape), partial (56%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0312759.1 length: 617 aa.

IPR003439 ABC transporter-like

method AccNumber shortName E-value location

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

HMMPfam PF00005 ABC_tran 2.1e-16 191-271
447-554

ProfileScan PS50893 ABC_TRANSPORTER_2 14.779 78-339
407-616

IPR003593 AAA+ ATPase domain

Molecular Function GO:0000166 nucleotide binding

Molecular Function GO:0017111 nucleoside-triphosphatase activity

HMMSmart SM00382 ATPases 2.3e-11 102-316
432-599

IPR017871 ABC transporter, conserved site

Molecular Function GO:0005524 ATP binding

Molecular Function GO:0016887 ATPase activity

PatternScan PS00211 ABC_TRANSPORTER_1 NA 243-257
526-540

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 8.5e-40 418-599
78-326

no_ID

Gene3D G3DSA:3.40.50.300 no description 1.5e-37 78-358
405-611

HMMPanther PTHR19211 ATP-BINDING 0 1-617

HMMPanther PTHR19211:SF18 ATP-DEPENDENT 0 1-617

HMMPfam PF12848 ABC_tran_2 5.9e-21 310-390

Seg seg seg NA 22-43
164-174

Wolf-PSORT

Lj0g3v0312759.1 cyto 12, chlo 1, nucl 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0312759.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LXJ6_SOYBN	1096	85.7	90.3	(tr\|I1LXJ6) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep	AT1G64550.1	1028	79.6	86.5	\| Symbols: ATGCN3, GCN3 \| general control non-repressible 3 \| chr1:23968850-23973369 FORWARD LENGTH=715
Medicago	Medtr3g080970.1	1078	84.3	89.5	\| ABC transporter F family-like protein \| HC \| chr3:36645188-36654918 \| 20130731
Soybean	Glyma13g10530.1	1096	85.7	90.3
LJGI	gnl\|LJGI\|TC78821	2379	99.9	99.9	homologue to UniRef100_A7QU38 Cluster: Chromosome chr2 scaffold_176, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr2 scaffold_176, whole genome shotgun sequence - Vitis vinifera (Grape), partial (56%)

IPR003439	ABC transporter-like
Lj0g3v0312759.1				length: 617 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
HMMPfam	PF00005	ABC_tran	2.1e-16	191-271 447-554
ProfileScan	PS50893	ABC_TRANSPORTER_2	14.779	78-339 407-616
IPR003593	AAA+ ATPase domain
Molecular Function	GO:0000166	nucleotide binding
Molecular Function	GO:0017111	nucleoside-triphosphatase activity
HMMSmart	SM00382	ATPases	2.3e-11	102-316 432-599
IPR017871	ABC transporter, conserved site
Molecular Function	GO:0005524	ATP binding
Molecular Function	GO:0016887	ATPase activity
PatternScan	PS00211	ABC_TRANSPORTER_1	NA	243-257 526-540
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	8.5e-40	418-599 78-326
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1.5e-37	78-358 405-611
HMMPanther	PTHR19211	ATP-BINDING	0	1-617
HMMPanther	PTHR19211:SF18	ATP-DEPENDENT	0	1-617
HMMPfam	PF12848	ABC_tran_2	5.9e-21	310-390
Seg	seg	seg	NA	22-43 164-174