Miyakogusa Predicted Gene
- Lj0g3v0312389.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KCV6_SOYBN |
1059 |
87.6 |
91.6 |
(tr|I1KCV6) Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT1G68710.1 |
902 |
72.3 |
83.7 |
| Symbols: | ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein | chr1:25793498-25797975 REVERSE LENGTH=1200 |
| Medicago |
Medtr8g069920.1 |
1002 |
80.5 |
87.5 |
| phospholipid-transporting ATPase-like protein | HC | chr8:29594356-29585952 | 20130731 |
| Soybean |
Glyma06g21140.1 |
1058 |
87.6 |
91.6 |
|
| LJGI |
gnl|LJGI|TC81733 |
1065 |
98.8 |
98.8 |
weakly similar to UniRef100_A7P2Z2 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0312389.1 |
length: 594 aa. |
| IPR001757 |
Cation-transporting P-type ATPase |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006812 |
cation transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Molecular Function |
GO:0019829 |
cation-transporting ATPase activity |
|
|
| HMMTigr |
TIGR01494 |
ATPase_P-type: |
4.9e-32 |
263-373 |
| IPR006539 |
Phospholipid-transporting P-type ATPase, subfamily IV |
| Molecular Function |
GO:0000287 |
magnesium ion binding |
|
|
| Molecular Function |
GO:0004012 |
phospholipid-translocating ATPase activity |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| Biological Process |
GO:0015914 |
phospholipid transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR24092 |
FAMILY |
0 |
9-594 |
| HMMTigr |
TIGR01652 |
ATPase-Plipid: |
3.5e-224 |
8-576 |
| IPR023214 |
HAD-like domain |
| Gene3D |
G3DSA:3.40.50.1000 |
no description |
2.3e-41 |
261-347 |
| superfamily |
SSF56784 |
HAD-like |
1.2e-28 |
119-341 |
| IPR023299 |
P-type ATPase, cytoplasmic domain N |
| Gene3D |
G3DSA:3.40.1110.10 |
no description |
5e-29 |
10-132 |
| superfamily |
SSF81660 |
Metal |
1e-16 |
5-134 |
| no_ID |
|
| HMMPanther |
PTHR24092:SF8 |
SUBFAMILY |
0 |
9-594 |
| HMMPfam |
PF12710 |
HAD |
2.1e-09 |
47-302 |
| Seg |
seg |
seg |
NA |
384-395 |
| superfamily |
SSF81665 |
Calcium |
7.9e-26 |
100-570 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
353 |
375 |
| 389 |
411 |
| 433 |
455 |
| 470 |
492 |
| 499 |
521 |
| 543 |
565 |
- Wolf-PSORT
Lj0g3v0312389.1 chlo 6, nucl 2, cyto 2, plas 2, cyto_nucl 2, nucl_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0312389.1 |
|