Miyakogusa Predicted Gene

Lj0g3v0310849.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NI06_SOYBN 468 56.6 58.2 (tr|I1NI06) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G14300.1 301 60.3 72.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:8231179-8232785 FORWARD LENGTH=411
Medicago Medtr1g073690.2 389 77.7 81.6 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr1:32695268-32699181 | 20130731
Soybean Glyma20g34330.1 468 56.6 58.2  
LJGI gnl|LJGI|TC77155 581 99.3 99.3 similar to UniRef100_A7NXG9 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0310849.1 length: 479 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 4.7e-19 8-75
114-182
HMMSmart SM00360 RNA 1.9e-26 7-78
113-185
ProfileScan PS50102 RRM 19.212 6-82
112-189
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 4e-28 4-87
91-205
no_ID  
HMMPanther PTHR24012 FAMILY 1.3e-129 1-474
HMMPanther PTHR24012:SF27 SUBFAMILY 1.3e-129 1-474
Seg seg seg NA 95-108
195-222
258-309
327-385
403-425
453-479
superfamily SSF54928 RNA-binding 5e-25 111-221
2-110
Wolf-PSORT
Lj0g3v0310849.1	nucl 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0310849.1