Miyakogusa Predicted Gene
- Lj0g3v0307239.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7KK77_MEDTR |
351 |
66.7 |
78.4 |
(tr|G7KK77) Resistance protein PRG OS=Medicago truncatula GN=MTR_6g076220 PE=4 SV=1 |
| TAIR_pep |
AT1G27170.1 |
198 |
41.4 |
62.5 |
| Symbols: | transmembrane receptors;ATP binding | chr1:9434718-9439219 FORWARD LENGTH=1384 |
| Medicago |
Medtr0038s0060.1 |
350 |
66.3 |
78.0 |
| functional resistance protein KR1, putative | LC | scaffold0038:34557-40141 | 20130731 |
| Soybean |
Glyma16g33680.1 |
345 |
62.4 |
79.5 |
|
| LJGI |
gnl|LJGI|TC59247 |
1314 |
99.9 |
99.9 |
weakly similar to UniRef100_Q9FVK2 Cluster: Resistance protein MG13; n=1; Glycine max|Rep: Resistance protein MG13 - Glycine max (Soybean), partial (49%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0307239.1 |
length: 288 aa. |
| IPR000157 |
Toll/interleukin-1 receptor homology (TIR) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Biological Process |
GO:0007165 |
signal transduction |
|
|
| HMMPfam |
PF01582 |
TIR |
9.7e-36 |
23-162 |
| HMMSmart |
SM00255 |
Toll |
4.3e-41 |
20-167 |
| ProfileScan |
PS50104 |
TIR |
28.233 |
19-167 |
| superfamily |
SSF52200 |
Toll/Interleukin |
3.6e-42 |
9-170 |
| IPR002182 |
NB-ARC |
| Molecular Function |
GO:0043531 |
ADP binding |
|
|
| HMMPfam |
PF00931 |
NB-ARC |
7.3e-08 |
211-269 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
9.3e-07 |
206-279 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.10140 |
no description |
1.2e-23 |
19-156 |
| HMMPanther |
PTHR11017 |
LEUCINE-RICH |
2.3e-64 |
10-270 |
| HMMPanther |
PTHR11017:SF130DISEASE |
RESISTANCE |
2.3e-64 |
10-270 |
| Seg |
seg |
seg |
NA |
6-16 |
- Wolf-PSORT
Lj0g3v0307239.1 cyto 5.5, cyto_nucl 4.5, nucl 2.5, vacu 2, chlo 1.5, chlo_mito 1.5, cysk 1, golg 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0307239.1 |
Not targeted |
-44.568 |
-0.078 |
-3.067 |
63.62% |
-41.422
|