Miyakogusa Predicted Gene

Lj0g3v0304749.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1J4T8_SOYBN 1676 87.1 92.0 (tr|I1J4T8) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT4G25960.1 1441 74.9 85.8 | Symbols: PGP2 | P-glycoprotein 2 | chr4:13177438-13183425 FORWARD LENGTH=1273
Medicago Medtr5g029750.1 1659 86.6 91.9 | ABC transporter B family-like protein | HC | chr5:12514487-12523815 | 20130731
Soybean Glyma01g02060.1 1676 87.1 92.0  
LJGI gnl|LJGI|AV776921 821 99.8 99.8 similar to UniRef100_A7PC62 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (49%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0304749.1 length: 938 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 4.4e-46 429-701
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1.9e-24 153-278
788-913
ProfileScan PS50893 ABC_TRANSPORTER_2 15.426 111-347
746-938
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.1e-10 138-330
773-937
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 3.6e-49 414-897
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 250-264
885-899
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 37.558 427-713
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.4e-59 90-333
725-938
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 4.8e-39 414-727
Gene3D G3DSA:3.40.50.300 no description 6.6e-71 110-342
745-938
HMMPanther PTHR24221 FAMILY 0 7-938
Seg seg seg NA 9-19
473-485
783-795
Putative transmembrane regions
  From To
TM segments
SOSUI		 21 43
49 71
430 452
468 490
564 586
Wolf-PSORT
Lj0g3v0304749.1	plas 8, chlo 3, E.R. 2, chlo_mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0304749.1