Miyakogusa Predicted Gene

Lj0g3v0303629.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T7J4_LOTJA 422 100.0 100.0 (tr|I3T7J4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT4G17530.1 392 91.6 95.0 | Symbols: RAB1C, ATRAB1C, ATRABD2C | RAB GTPase homolog 1C | chr4:9773721-9775424 REVERSE LENGTH=202
Medicago Medtr7g081700.1 397 91.6 97.5 | RAB GTPase-like protein B1C | HC | chr7:31228785-31232855 | 20130731
Soybean Glyma05g05260.1 421 99.0 100.0  
LJGI gnl|LJGI|TC61894 1213 100.0 100.0 UniRef100_Q40203 Cluster: RAB1C; n=1; Lotus japonicus|Rep: RAB1C - Lotus japonicus, complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0303629.1 length: 202 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 4.1e-47 9-30
32-48
50-72
112-125
147-169
HMMPfam PF00071 Ras 2.2e-67 10-170
IPR002041 Ran GTPase
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0006913 nucleocytoplasmic transport    
Biological Process GO:0007165 signal transduction    
HMMSmart SM00176 Ran 8.4e-06 14-199
IPR003578 Small GTPase superfamily, Rho type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00174 Rho 5.4e-16 11-171
IPR003579 Small GTPase superfamily, Rab type
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
Biological Process GO:0015031 protein transport    
HMMSmart SM00175 Rab 1.2e-109 9-172
IPR005225 Small GTP-binding protein domain
Molecular Function GO:0005525 GTP binding    
HMMTigr TIGR00231 small_GTP: 5.6e-35 7-163
IPR020849 Small GTPase superfamily, Ras type
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Biological Process GO:0007165 signal transduction    
Cellular Component GO:0016020 membrane    
HMMSmart SM00173 Ras 6.9e-37 6-172
IPR024156 Small GTPase superfamily, ARF type
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMSmart SM00177 ARF-like 0.005 1-177
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1e-73 4-200
no_ID  
Gene3D G3DSA:3.40.50.300 no description 3.8e-77 2-200
HMMPanther PTHR24073 FAMILY 6e-143 1-202
HMMPanther PTHR24073:SF212SUBFAMILY NOT 6e-143 1-202
ProfileScan PS51419 RAB 39.406 4-202
Wolf-PSORT
Lj0g3v0303629.1	chlo 4, nucl 4, extr 4, cyto 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0303629.1