Miyakogusa Predicted Gene

Lj0g3v0303369.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr0

Full length sequence(192322135 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL E2FKI7_SOYBN 1131 80.1 90.8 (tr|E2FKI7) Sieve element occlusion p OS=Glycine max GN=SEOp PE=2 SV=1

TAIR_pep AT3G01680.1 177 24.4 45.3 | Symbols: | CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:252033-255246 FORWARD LENGTH=740

Medicago Medtr1g040360.1 589 45.2 65.6 | sieve element occlusion protein | HC | chr1:14928002-14931849 | 20130731

Soybean Glyma20g12020.1 941 80.2 90.7

LJGI gnl|LJGI|TC63414 977 98.3 98.3 similar to UniRef100_A8C976 Cluster: Forisome; n=1; Canavalia gladiata|Rep: Forisome - Canavalia gladiata (Sword bean) (Japanese jack bean), partial (13%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj0g3v0303369.1 length: 673 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 343-364

Wolf-PSORT

Lj0g3v0303369.1 cyto 6, nucl 4, cyto_pero 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj0g3v0303369.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	E2FKI7_SOYBN	1131	80.1	90.8	(tr\|E2FKI7) Sieve element occlusion p OS=Glycine max GN=SEOp PE=2 SV=1
TAIR_pep	AT3G01680.1	177	24.4	45.3	\| Symbols: \| CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr3:252033-255246 FORWARD LENGTH=740
Medicago	Medtr1g040360.1	589	45.2	65.6	\| sieve element occlusion protein \| HC \| chr1:14928002-14931849 \| 20130731
Soybean	Glyma20g12020.1	941	80.2	90.7
LJGI	gnl\|LJGI\|TC63414	977	98.3	98.3	similar to UniRef100_A8C976 Cluster: Forisome; n=1; Canavalia gladiata\|Rep: Forisome - Canavalia gladiata (Sword bean) (Japanese jack bean), partial (13%)

no_ID
Lj0g3v0303369.1				length: 673 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	343-364