Miyakogusa Predicted Gene
- Lj0g3v0302589.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JCA4_SOYBN |
194 |
40.3 |
56.7 |
(tr|I1JCA4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G23880.1 |
71.6 |
30.5 |
44.2 |
| Symbols: | F-box and associated interaction domains-containing protein | chr3:8622061-8623155 REVERSE LENGTH=364 |
| Medicago |
Medtr4g037465.1 |
201 |
42.5 |
59.3 |
| F-box protein interaction domain protein | HC | chr4:13786963-13784129 | 20130731 |
| Soybean |
Glyma02g04720.1 |
194 |
40.3 |
56.7 |
|
| LJGI |
gnl|LJGI|BP057238 |
652 |
100.0 |
100.0 |
similar to UniRef100_O48542 Cluster: Peptide transporter; n=1; Hordeum vulgare|Rep: Peptide transporter - Hordeum vulgare, partial (2%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0302589.1 |
length: 275 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
6.8e-11 |
10-47 |
| HMMSmart |
SM00256 |
A |
1.6e-10 |
10-50 |
| ProfileScan |
PS50181 |
FBOX |
13.286 |
10-50 |
| superfamily |
SSF81383 |
F-box |
3.1e-13 |
10-191 |
| IPR017451 |
F-box associated interaction domain |
| HMMTigr |
TIGR01640 |
F_box_assoc_1: |
2e-12 |
107-271 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
3.5e-11 |
9-47 |
| Seg |
seg |
seg |
NA |
208-214 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
6 |
28 |
| 101 |
123 |
- Wolf-PSORT
Lj0g3v0302589.1 chlo 7, nucl 2, cyto 2, E.R. 2, cyto_nucl 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0302589.1 |
|