Miyakogusa Predicted Gene

Lj0g3v0302229.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1J411_SOYBN 1174 77.3 87.4 (tr|I1J411) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G49170.1 874 57.4 75.6 | Symbols: EMB2261 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:18226954-18229600 REVERSE LENGTH=850
Medicago Medtr4g031160.1 1139 75.7 86.1 | pentatricopeptide (PPR) repeat protein | HC | chr4:10600555-10597860 | 20130731
Soybean Glyma0048s00240.1 1171 77.3 87.4  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0302229.1 length: 722 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.069 8-38
289-314
490-513
HMMPfam PF13041 PPR_2 1.9e-13 109-156
213-261
415-462
HMMTigr TIGR00756 PPR: 7.7e-09 8-42
111-144
289-315
389-415
417-450
ProfileScan PS51375 PPR 5.064 6-40
109-143
77-108
41-75
144-178
213-248
249-283
284-318
415-449
384-414
349-383
450-485
486-516
552-586
518-548
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 8.7e-05 518-571
no_ID  
HMMPanther PTHR24015 FAMILY 6.1e-294 5-722
HMMPanther PTHR24015:SF62 SUBFAMILY 6.1e-294 5-722
HMMPfam PF14432 DYW_deaminase 4.2e-20 598-712
Putative transmembrane regions
  From To
TM segments
SOSUI		 169 191
278 299
348 370
Wolf-PSORT
Lj0g3v0302229.1	chlo 9, cyto 2, nucl 1, plas 1, extr 1, nucl_plas 1, cyto_pero 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0302229.1