Miyakogusa Predicted Gene

Lj0g3v0301709.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K0BV36_LOTJA 751 95.3 95.3 (tr|K0BV36) SIE3 OS=Lotus japonicus GN=SIE3 PE=2 SV=1
TAIR_pep AT4G37880.1 446 54.4 73.3 | Symbols: | LisH/CRA/RING-U-box domains-containing protein | chr4:17810183-17811349 FORWARD LENGTH=388
Medicago Medtr8g067470.1 628 78.1 87.2 | LisH/CRA/RING-U-box protein | HC | chr8:28172299-28173450 | 20130731
Soybean Glyma01g23830.1 673 83.2 89.1  
LJGI gnl|LJGI|TC62339 1334 99.9 99.9 similar to UniRef100_A7QSA7 Cluster: Chromosome chr3 scaffold_157, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_157, whole genome shotgun sequence - Vitis vinifera (Grape), partial (41%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0301709.1 length: 380 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 0.00076 323-366
ProfileScan PS50089 ZF_RING_2 8.653 323-366
IPR006595 CTLH, C-terminal LisH motif
HMMSmart SM00668 C-terminal 1.5e-07 150-207
ProfileScan PS50897 CTLH 10.937 150-207
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 4.8e-08 321-373
IPR013144 CRA domain
HMMSmart SM00757 CT11-RanBPM 2.2e-24 203-297
IPR024964 CTLH/CRA C-terminal to LisH motif domain
HMMPfam PF10607 CLTH 1.9e-32 151-290
IPR027370 RING-type zinc-finger, LisH dimerisation motif
HMMPfam PF13445 zf-RING_LisH 2.9e-22 312-365
no_ID  
Coil coil coiled-coil NA 28-49
HMMPanther PTHR12170 MACROPHAGE 1.3e-138 1-380
HMMPanther PTHR12170:SF3 SPORULATION 1.3e-138 1-380
Seg seg seg NA 14-25
superfamily SSF57850 RING/U-box 2e-08 318-371
Wolf-PSORT
Lj0g3v0301709.1	nucl 8, cyto 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0301709.1