Miyakogusa Predicted Gene

Lj0g3v0301139.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1KA62_SOYBN 1127 80.1 88.1 (tr|I1KA62) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G08210.1 734 52.4 70.2 | Symbols: | Pentatricopeptide repeat (PPR-like) superfamily protein | chr4:5183813-5185873 REVERSE LENGTH=686
Medicago Medtr3g072900.1 1121 77.9 88.2 | PPR containing plant-like protein | HC | chr3:32815251-32818532 | 20130731
Soybean Glyma06g11520.1 1127 80.1 88.1  
LJGI gnl|LJGI|FS338724 1086 100.0 100.0 weakly similar to UniRef100_A7NV79 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0301139.1 length: 689 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.012 41-68
142-170
173-199
275-296
310-338
381-407
409-438
482-503
511-539
582-606
HMMPfam PF13041 PPR_2 2.1e-08 68-115
HMMPfam PF13812 PPR_3 0.23 550-578
HMMTigr TIGR00756 PPR: 3.2e-06 42-70
70-100
173-199
511-544
ProfileScan PS51375 PPR 6.215 68-102
37-67
170-204
139-169
104-138
235-269
306-340
270-304
407-441
376-406
341-375
508-542
477-507
543-578
579-609
645-679
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.9e-09 642-663
no_ID  
HMMPanther PTHR24015 FAMILY 4.3e-214 22-687
HMMPanther PTHR24015:SF103SUBFAMILY NOT 4.3e-214 22-687
superfamily SSF48452 TPR-like 0.00013 37-199
Wolf-PSORT
Lj0g3v0301139.1	chlo 5.5, chlo_mito 5, nucl 4, mito 3.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0301139.1