Miyakogusa Predicted Gene

Lj0g3v0300949.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T517_LOTJA 989 96.4 97.2 (tr|I3T517) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G13080.1 826 77.8 90.2 | Symbols: ATMRP3, MRP3, ABCC3 | multidrug resistance-associated protein 3 | chr3:4196019-4201250 REVERSE LENGTH=1514
Medicago Medtr5g094830.1 915 88.6 94.3 | multidrug resistance protein ABC transporter family protein | HC | chr5:41454197-41447535 | 20130731
Soybean Glyma18g32860.1 952 90.8 95.8  
LJGI gnl|LJGI|TC73429 1501 99.7 99.7 similar to UniRef100_A7Q934 Cluster: Chromosome chr19 scaffold_66, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_66, whole genome shotgun sequence - Vitis vinifera (Grape), partial (25%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0300949.1 length: 498 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 3.8e-25 10-193
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 9.4e-22 289-413
ProfileScan PS50893 ABC_TRANSPORTER_2 19.068 248-482
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 1.8e-12 274-466
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 5e-46 10-230
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 30.881 1-211
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 5.4e-52 227-468
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 5.9e-50 7-229
Gene3D G3DSA:3.40.50.300 no description 3.1e-61 248-483
HMMPanther PTHR24223 FAMILY 0 1-491
HMMPanther PTHR24223:SF106GTP BINDING 0 1-491
Seg seg seg NA 398-408
Putative transmembrane regions
  From To
TM segments
SOSUI		 52 74
Wolf-PSORT
Lj0g3v0300949.1	chlo 9.5, chlo_mito 5.5, nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0300949.1