Miyakogusa Predicted Gene

Lj0g3v0299959.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LVC6_SOYBN 532 90.5 93.3 (tr|I1LVC6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G16405.1 486 80.4 89.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:7105915-7108787 REVERSE LENGTH=482
Medicago Medtr8g037340.1 532 89.8 93.3 | transducin/WD40 repeat protein | HC | chr8:13935904-13944339 | 20130731
Soybean Glyma12g36500.1 532 90.5 93.3  
LJGI gnl|LJGI|TC57497 1130 99.8 99.8 similar to UniRef100_A7P7V0 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (69%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0299959.2 length: 285 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.2e-10 46-81
HMMSmart SM00320 WD40 61 1-38
42-81
84-123
126-164
175-218
235-271
ProfileScan PS50082 WD_REPEATS_2 15.388 49-90
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.8e-41 3-284
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 14.687 5-132
superfamily SSF50978 WD40 6.9e-37 9-285
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 68-82
no_ID  
HMMPanther PTHR22847 WD40 5.8e-108 47-285
HMMPanther PTHR22847:SF237SUBFAMILY NOT 5.8e-108 47-285
Seg seg seg NA 173-186
Wolf-PSORT
Lj0g3v0299959.2	cyto 6, nucl 4, chlo 3, cyto_pero 3, cyto_E.R. 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0299959.2